Malformations of the kidney and lower urinary tract are common causes of ch
ronic renal failure in infants and young children, but little is known abou
t the molecular pathogenesis of these disorders. In animal experiments, the
main causes of malformation are mutations, chemical and pharmaceutical ter
atogens, obstruction of fetal urinary flow, and alterations of maternal nut
rition. The focus of this review is to consider how mutations and other alt
erations of gene expression during development cause human urinary tract ma
lformations. Some of these disorders are associated with congenital anomali
es in multiple organ systems, and two such syndromes are considered in deta
il: first. the renal-coloboma syndrome, in which mutations of the PAX2 tran
scription factor cause partial failure of urinary tract growth; second, Kal
lmann's syndrome, in which mutations of a cell-signaling molecule are assoc
iated with the absence of the urinary tract. In patients seen by nephrologi
sts and urologists, however, most urinary tract malformations occur in isol
ation, and in some of these individuals, a genetic pathogenesis is strongly
suggested by a positive family history and genetic linkage studies. One co
mmon example is primary vesicoureteric reflux. Furthermore, sporadic malfor
mations have been shown to be associated with polymorphisms of genes expres
sed during construction of the urinary tract. In the long term, an understa
nding of the genetic aspects of human urinary tract malformations will help
to unravel the pathogenesis of these disorders and may facilitate the desi
gn of genetic screening tests with a view to early diagnosis.