Isocitrate lyase (ICL) plays a pivotal role in the persistence of Mycobacte
rium tuberculosis in mice by sustaining intracellular infection in inflamma
tory macrophages. The enzyme allows net carbon gain by diverting acetyl-CoA
from beta-oxidation of fatty acids into the glyoxylate shunt pathway. Give
n its potential as a drug target against persistent infections, we solved i
ts structure without ligand and in complex with two inhibitors. Covalent mo
dification of an active site residue, Cys 191, by the inhibitor 3-bromopyru
vate traps the enzyme in a catalytic conformation with the active site comp
letely inaccessible to solvent. The structure of a C191S mutant of the enzy
me with the inhibitor 3-nitropropionate provides further insight into the r
eaction mechanism.