To evaluate the role of estrogen receptor in the differentiation of ce
lls of neural origin, we developed a molecular approach aimed at the i
dentification of estrogen target genes by mRNA differential display PC
R (ddPCR) in human neuroblastoma SK-ER3 cells. More than 3000 RNAs wer
e examined, a few of which displayed a differential regulation pattern
in response to 17 beta-estradiol (E-2). Sequence analysis of three di
fferentially amplified ddPCR products showed homology with the growth-
associated nuclear protein prothymosin-alpha (PTMA), the Bcl2-interact
ing protein Nip2, and one mRNA previously described by others in fetal
human brain. Two ddPCR products, referred to as P4 and P10, correspon
ded to new DNA sequences. Northern analysis confirmed that estrogen tr
eatment of SK-ER3 cells resulted in the upregulation and downregulatio
n of expression of these messages. In particular, PTMA was found to ac
cumulate at both 1 and 17 hr after E-2 treatment, whereas P10 product
accumulated only at 1 hr. Conversely, P4, Nip2, and the fetal brain-re
lated mRNAs were significantly decreased by the treatment. Further tim
e course analysis of PTMA and Nip2 mRNAs levels indicated that the hor
mone exerted a marked biphasic regulatory effect on expression of both
messages during the course of cell differentiation. In the present st
udy we report for the first time the identification of a panel of estr
ogen target genes in neural cells that provide new insights in the mol
ecular mechanism of action of E-2 in cells of neural origin.