Despite the explosive growth of activity in the field of Earth System
data assimilation over the past decade or so, there remains a substant
ial gap between theory and practice. The present article attempts to b
ridge this gap by exposing some of the central concepts of estimation
theory and connecting them with current and future data assimilation a
pproaches. Estimation theory provides a broad and natural mathematical
foundation for data assimilation science. Stochastic-dynamic modeling
and stochastic observation modeling are described first. Optimality c
riteria for linear and nonlinear state estimation problems are then ex
plored, leading to conditional-mean estimation procedures such as the
Kalman filter and some of its generalizations, and to conditional-mode
estimation procedures such as variational methods. A detailed derivat
ion of the Kalman filter is given to illustrate the role of key probab
ilistic concepts and assumptions. Extensions of the Kalman filter to n
onlinear observation operators and to non-Gaussian errors are then des
cribed. In a simple illustrative example, rigorous treatment of repres
entativeness error and model error is highlighted in finite-dimensiona
l estimation procedures for continuum dynamics and observations of the
continuum state.