The most demanding problems in proteomics continue to challenge modern mass
spectrometry. Recent developments in instrument design have led to lower l
imits of detection, while new ion activation techniques and improved unders
tanding of gas-phase ion chemistry have enhanced the capabilities of tandem
mass spectrometry for peptide and protein structure elucidation. Future de
velopments must address the understanding of protein-protein interactions a
nd the characterisation of the dynamic proteome.