There is a layer of mucus lining the gastrointestinal tract, which acts as
both a lubricant and as a physical barrier between luminal contents and the
mucosal surface. The mucins that make up this layer consist of a protein b
ackbone with oligosaccharides attached to specific areas of the protein cor
e. These areas are called the variable number tandem repeat regions. The de
gree of glycosylation of the mucins is central to their role in the mucus b
arrier. The oligosaccharides are variable and complex. It has been demonstr
ated that the degree of sulphation and sialylation and the length of the ol
igosaccharide chains all vary in inflammatory bowel disease. These changes
can alter the function of the mucins. Mucins are broadly divided into two g
roups, those that are secreted and those that are membrane bound. The major
mucins present in the colorectum are MUC1, MUC2, MUC3, and MUC4.
Trefoils are a group of small peptides that have an important role in the m
ucus layer. Three trefoils have been demonstrated so far. They seem to play
a part in mucosal protection and in mucosal repair. They may help to stabi
lise the mucus layer by cross linking with mucins to aid formation of stabl
e gels. Trefoils can be expressed in the ulcer associated cell lineage, a g
landular structure that can occur in the inflamed mucosa. There seem to be
differences in the expression of trefoils in the colon and the small bowel,
which may imply different method of mucosal repair.