A SIMPLE PROGRAM FOR SIMULATING THE RESPONSES OF NEURONS WITH ARBITRARILY STRUCTURED AND ACTIVE DENDRITIC TREES

Citation
Yd. Cai et al., A SIMPLE PROGRAM FOR SIMULATING THE RESPONSES OF NEURONS WITH ARBITRARILY STRUCTURED AND ACTIVE DENDRITIC TREES, Journal of neuroscience methods, 74(1), 1997, pp. 27-35
Citations number
29
Categorie Soggetti
Neurosciences
ISSN journal
01650270
Volume
74
Issue
1
Year of publication
1997
Pages
27 - 35
Database
ISI
SICI code
0165-0270(1997)74:1<27:ASPFST>2.0.ZU;2-#
Abstract
We describe a simple program to simulate neural responses. This progra m is based on the compartmental approach, in which all compartments of a neuron (i.e. axon, soma or dendrite) are represented by the same ba sic electrical structure. A parameter file is used to store the model parameters, including the nonlinear channel characteristics of each co mpartment. The model is then automatically configured according to the values specified in the parameter file. The computation of the conduc tance of each active channel over time is handled by a unique subrouti ne optimized according to the kinetics of each channel. The equations for arbitrarily structured trees are solved implicitly using a simple algorithm similar to that of Hines (Hines, M. (1984) Int. J. Biomed. C omput., 15:69-76). The output of the model uses PostScript format. The advantage of this program is that it is small in size, simple to use, efficient, and is platform independent. (C) 1997 Elsevier Science B.V .