Aryl hydrocarbon receptor nuclear translocator (ARNT) factors belong to a n
ovel basic-helix-loop helix-PAS (bHLH-PAS) transcription factor family that
controls a variety of physiological and developmental processes. In a prev
ious study, we obtained a partial complementary DNA fragment of an ARNT2-li
ke factor from zebrafish embryo, liver, and other tissues by reverse transc
ription-polymerase chain reaction. In an effort to characterize the functio
n of this factor, we screened an embryonic complementary DNA library and ob
tained a complete cDNA of this ARNT2-like factor, zARNT2A. The deduced prot
ein sequence of zARNT2A encompasses the basic-helix-loop-helix and PAS-A/B
motifs and shares highest sequence similarity with the aminoterminal half o
f mouse ARNT2 factor. However, it lacks a carboxy-terminal transactivation
motif following the PAS-A/B motifs. Transient expression of zARNT2A in cult
ured cells resulted in repression of TCDD-dependent CYP1A transcription. Wh
ole-mount in situ hybridization revealed that zARNT2A is expressed in brain
and pronephros at prime-5 stages. In adult fish, zARNT2A messenger RNA is
transcribed in a wide range of tissues, which indicates that zARNT2A and it
s corresponding signal transduction mechanisms have important roles in fish
development and other physiological aspects.