Initial denaturing conditions influence the slow folding phase of acylphosphatase associated with proline isomerization

The folding kinetics of human common-type acylphosphatase (cAcP) from its u rea- and TFE-denatured states have been determined by stopped-flow fluoresc ence techniques. The refolding reaction from the highly unfolded state form ed in urea is characterized by double exponential behavior that includes a slow phase associated with isomerism of the Gly53-Pro53 peptide bond. Howev er, this slow phase is absent when refolding is initiated by dilution of th e highly ct-helical denatured state formed in the presence of 40% trifluoro ethanol (TFE). NMR studies of a peptide fragment corresponding to residues Gly53-Gly69 of cAcP indicate that only the native-like trans isomer of the Gly-Pro peptide bond is significantly populated in the presence of TFE, whe reas both the cis and trans isomers are found in an similar to 1:9 ratio fo r the peptide bond in aqueous solution. Molecular modeling studies in conju nction with NMR experiments suggest that the trans isomer of the Gly53-Pro5 4 peptide bond is stabilized in TFE by the formation of a nonnative-like hy drogen bond between the CO group of Gly53 and the NH group of Lys57. These results therefore reveal that a specific nonnative interaction in the denat ured state can increase significantly the overall efficiency of refolding.