Several immunodeficiency-related genes have been identified and a large num
ber of mutations in these genes. Currently, a genetic defect has been deter
mined in more than 2000 patients. Only recently has it become possible to a
ddress structure-function effects of these mutations in the corresponding p
roteins. The consequences of mutations in structure are discussed for Btk i
n X-linked agammaglobulinemia (XLA), Jak3 in T-B+ severe combined immunodef
iciency (SCID), p47(phox) and p67(phox) in autosomal chronic granulomatous
disease (CGD) and SH2D1 A in X-linked lymphoproliferatine disease (XLP). Th
e experimental and homology modelling derived structures were used to analy
ze mechanisms related to these diseases.