Traits that cause assortative mating such as the flowering time in plants a
nd body size in animals call produce reproductive isolation between hybridi
zing populations. Can selection against unfit hybrids cause two populations
to diverge in their mean values for these kinds of traits? Here I present
a haploid analytical model of one population that receives gene flow from a
nother. The partial pre-zygotic isolation between the two populations is ca
used by assortative mating for a trait that is influenced by any number of
genes with additive effects. The post-zygotic isolation is caused by select
ion against genetic incompatibilities that can involve any form of selectio
n on individual genes and gene combinations (epistasis). The analysis assum
es that the introgression rate and selection coefficients are small. The re
sults show that the assortment trait mean will not diverge from the immigra
nts unless there is direct selection on the trait favouring it to do so or
there are genes of very large effect. The amount of divergence at equilibri
um is determined by a balance between direct selection on the assortment tr
ait and introgression from the other population Additional selection agains
t hybrid genetic incompatibilities reduces the effective migration rate and
allows greater divergence. The role of assortment in speciation is discuss
ed in the light of these results.