The spatial polarisation distribution in inhomogeneously polar molecular cr
ystals has been imaged by scanning pyroelectric tomography and simulated by
a Markov process. The experimental technique combines scanning pyroelectri
c microscopy (SPEM) with layerwise thinning of crystals. The SPEM probes th
e local spontaneous polarisation by its temperature dependence (pyroelectri
c effect). A focused and intensity modulated laser beam scans the surface o
f a polar sample and induces temperature changes in a volume depending on t
he laser spot size and the thermal diffusion length lambda(th) Since high l
ateral resolution of the SPEM is only available for small values of lambda(
th) depth information to a resolution of similar to 10 mu m is achieved by
repeated scanning and stepwise thinning of crystals. A layer by layer techn
ique can provide 3D imaging of the polar ordering with a lateral resolution
of similar to 20 mu m at a probed layer thickness of similar to 10 mu m. A
pplied to perhydrotriphenylene (PI-ITP) co-crystallised with 1-(4-nitrophen
yl)piperazine (NPP) two conical macro-domains of opposite and nearly consta
nt polarisation were found. The SPEM results are in good agreement with a h
omogeneous Markov chain model driving dipolar molecules into a parallel sta
te within channels of PHTP. The new tomographic view reveals that the oppos
ing cones are partially overlapping at the tips. Lateral growth processes a
re assumed to be responsible for this. A theoretical section covers aspects
of the convergency into the polar state and the length of polar chains dis
cussed in terms of intermolecular interaction energies.