The N-sulfated regions (NS domains) represent the modified sequences of hep
aran sulfate chains and mediate interactions of the polysaccharide with pro
teins. We have investigated the relationship between the type/extent of pol
ymer modification and the length of NS domains in heparan sulfate species f
rom human aorta, bovine kidney, and cultured NMuMG and MDCK cells. C5 epime
rization of D-glucuronic acid to L-iduronic acid was found to be extensive
and essentially similar in all heparan sulfate species studied, regardless
of domain size, whereas the subsequent 2-O-sulfation of the formed iduronic
acid residues varies appreciably. In aorta heparan sulfate, up to 90% of t
he formed iduronate residues were 2-O-sulfated, whereas in kidney heparan s
ulfate 2-O-sulfation occurred only in less than or equal to 50% of the idur
onate residues. The degree of 2-O-sulfation was consistently increased with
increasing NS domain length, suggesting a correlation between 2-O-sulfatio
n efficiency and length of the polymeric substrate during heparan sulfate b
iosynthesis. By contrast, 6-O-sulfation of glucosamine units did not correl
ate to domain size. 6-O-Sulfation exceeded 2-O-sulfation in NS domains from
kidney heparan sulfate, but was very low in aorta heparan sulfate. Remarka
bly, total O-sulfation of NS domains, i.e., the sum of 2-O- and 6-O-sulfate
groups, was highly similar in all heparan sulfate samples investigated. Th
e results reveal marked tissue-specific variation in the sulfation patterns
of NS domains and indicate previously unrecognized distinctions in the coo
rdination of the three polymer modification reactions during heparan sulfat
e biosynthesis.