The phylogenetic position of the recently extinct marsupial 'wolf', or
thylacine (Thylacinus cynocephalus), has been a source of contention
in mammalian systematics for nearly a century. Thylacines were endemic
to Australasia, but possessed striking anatomical similarities to Oli
go-Miocene borhyaenid marsupials of South America. At issue has been w
hether these features are indicative of common ancestry or convergent
adaptation to carnivory. Recent morphological studies have supported b
oth conclusions. Although current marsupial classifications group thyl
acines with Australian dasyuromorphians, this putative clade is charac
terized by mostly primitive morphological features. Attempts to determ
ine thylacine affinities with ancient protein and DNA analyses have su
pported, but not resolved, a dasyuromorphian placement. We report 1546
bp of mitochondrial DNA sequence (from cytochrome b and 12S rRNA gene
s) and 841 bp of nuclear protamine gene sequence from the thylacine an
d representatives of all or most other marsupial orders. Phylogenetic
analysis of these sequences shows unambiguously that thylacines are me
mbers of Dasyuromorphia, and suggests a late Oligocene or very early M
iocene divergence of familial lineages.