The nucleotide excision repair protein UvrB, a helicase-like enzyme with acatch

Nucleotide excision repair (NER) is a universal DNA repair mechanism found in all three kingdoms of life. Its ability to repair a broad range of DNA l esions sets NER apart From other repair mechanisms. NER systems recognize t he damaged DNA strand and cleave it 3', then 5' to the lesion. After the ol igonucleotide containing the lesion is removed, repair synthesis fills the resulting gap. UvrB is the central component of bacterial NER. It is direct ly involved in distinguishing damaged from undamaged DNA and guides the DNA from recognition to repair synthesis. Recently solved structures of UvrB f rom different organisms represent the first high-resolution view into bacte rial NER. The structures provide detailed insight into the domain architect ure of UvrB and, through comparison, suggest possible domain movements. The structure of UvrB consists of five domains. Domains la and 3 bind ATP at t he inter-domain interface and share high structural similarity to helicases of superfamilies I and II. Not related to helicase structures, domains 2 a nd 4 are involved in interactions with either UvrA or UvrC, whereas domain Ib was implicated for DNA binding. The structures indicate that ATP binding and hydrolysis is associated with domain motions. UvrB's ATPase activity, however, is not coupled to the separation of long DNA duplexes as in helica ses, but rather leads to the formation of the preincision complex with the damaged DNA substrate. The location of conserved residues and structural co mparisons with helicase-DNA structures suggest how UvrB might bind to DNA. A model of the UvrB-DNA interaction in which a beta-hairpin of UvrB inserts between the DNA double strand has been proposed recently. This padlock mod el is developed further to suggest two distinct consequences of domain moti on: in the UvrA(2)B-DNA complex, domain motions lead to translocation along the DNA, whereas in the tight UvrB-DNA pre-incision complex, they lead to distortion of the 3' incision site. (C) 2000 Elsevier Science B.V. All righ ts reserved.