An important class of experiments in functional brain mapping involves coll
ecting pairs of data Corresponding to separate "Task" and "Control'' condit
ions. The data are then analyzed to determine what activity occurs during t
he Task experiment but not in the Control, Here me describe a new method fo
r processing paired magnetoencephalographic (MEG) data sets using our recur
sively applied and projected multiple signal classification (RAP-MUSIC) alg
orithm. In this method the signal subspace of the Task data is projected ag
ainst the orthogonal complement of the Control data signal subspace to obta
in a subspace which describes spatial activity unique to the Task, A RAP-MU
SIC localization search is then performed on this projected data to localiz
e the sources which are active in the Task but not in the Control data. in
addition to dipolar sources, effective blocking of more complex sources, e.
g., multiple synchronously activated dipoles or synchronously activated dis
tributed source activity, is possible since these topographies are well-des
cribed by the Control data signal subspace, Unlike previously published met
hods, the proposed method is shown to be effective in situations where the
time series associated with Control and Task activity possess significant c
ross correlation. The method also allows for straightforward determination
of the estimated time series of the localized target sources, A multiepoch
MEG simulation and a phantom experiment are presented to demonstrate the ab
ility of this method to successfully identify sources and their time series
in the Task data.