On the similarity of properties in solution or in the crystalline state: Amolecular dynamics study of hen lysozyme

Citation
U. Stocker et al., On the similarity of properties in solution or in the crystalline state: Amolecular dynamics study of hen lysozyme, J BIOM NMR, 18(1), 2000, pp. 1-12
Citations number
30
Categorie Soggetti
Biochemistry & Biophysics
Journal title
JOURNAL OF BIOMOLECULAR NMR
ISSN journal
09252738 → ACNP
Volume
18
Issue
1
Year of publication
2000
Pages
1 - 12
Database
ISI
SICI code
0925-2738(200009)18:1<1:OTSOPI>2.0.ZU;2-T
Abstract
As protein crystals generally possess a high water content, it is assumed t hat the behaviour of a protein in solution and in crystal environment is ve ry similar. This assumption can be investigated by molecular dynamics (MD) simulation of proteins in the different environments. Two 2ns simulations o f hen egg white lysozyme (HEWL) in crystal and solution environment are com pared to one another and to experimental data derived from both X-ray and N MR experiments, such as crystallographic B-factors, NOE atom-atom distance bounds, (3)J(H) N alpha-coupling constants, and H-1-N-15 bond vector order parameters. Both MD simulations give very similar results. The crystal simu lation reproduces X-ray and NMR data slightly better than the solution simu lation.