T. Torok et al., Prod is a novel DNA-binding protein that binds to the 1.686 g/cm(3) 10 bp satellite repeat of Drosophila melanogaster, NUCL ACID R, 28(18), 2000, pp. 3551-3557
The proliferation disrupter (prod) gene of Drosophila melanogaster encodes
a novel protein associated with centromeric chromosomal regions that is req
uired for chromatin condensation and cell viability. We have examined the b
inding of the Prod protein to DNA in vitro, Co-immunoprecipitation experime
nts demonstrate that Prod is a DNA-binding protein that specifically recogn
izes the 10 bp AGAATAACAT satellite repeat of D. melanogaster. Footprinting
experiments show that the protein interacts with a 5-8 bp target sequence
in each 10 bp repeat and suggest that it can mediate condensation of this s
atellite into a superhelix. Gel retardation experiments indicate that Prod
does not have a well defined DNA-binding domain and it binds the satellite
in a co-operative manner, probably forming Prod multimers, Since Prod local
izes to both heterochromatin and euchromatin in vivo, we discuss the possib
ility that the ability of pre-existing euchromatic proteins to bind DNA in
a co-operative manner, might be a prerequisite of satellite compaction and
satellite amplification, thereby providing a basic factor in heterochromati
n evolution.