Prod is a novel DNA-binding protein that binds to the 1.686 g/cm(3) 10 bp satellite repeat of Drosophila melanogaster

Citation
T. Torok et al., Prod is a novel DNA-binding protein that binds to the 1.686 g/cm(3) 10 bp satellite repeat of Drosophila melanogaster, NUCL ACID R, 28(18), 2000, pp. 3551-3557
Citations number
34
Categorie Soggetti
Biochemistry & Biophysics
Journal title
NUCLEIC ACIDS RESEARCH
ISSN journal
03051048 → ACNP
Volume
28
Issue
18
Year of publication
2000
Pages
3551 - 3557
Database
ISI
SICI code
0305-1048(20000915)28:18<3551:PIANDP>2.0.ZU;2-Q
Abstract
The proliferation disrupter (prod) gene of Drosophila melanogaster encodes a novel protein associated with centromeric chromosomal regions that is req uired for chromatin condensation and cell viability. We have examined the b inding of the Prod protein to DNA in vitro, Co-immunoprecipitation experime nts demonstrate that Prod is a DNA-binding protein that specifically recogn izes the 10 bp AGAATAACAT satellite repeat of D. melanogaster. Footprinting experiments show that the protein interacts with a 5-8 bp target sequence in each 10 bp repeat and suggest that it can mediate condensation of this s atellite into a superhelix. Gel retardation experiments indicate that Prod does not have a well defined DNA-binding domain and it binds the satellite in a co-operative manner, probably forming Prod multimers, Since Prod local izes to both heterochromatin and euchromatin in vivo, we discuss the possib ility that the ability of pre-existing euchromatic proteins to bind DNA in a co-operative manner, might be a prerequisite of satellite compaction and satellite amplification, thereby providing a basic factor in heterochromati n evolution.