Structural variations of the VWA locus in humans and comparison with non-human primates

The HUMVWA locus was examined in 160 samples from the Japanese population. A total of 142 fragments were sequenced, and the counterpart sequences were also determined in non-human primates. In humans, 10 different alleles wer e found; they could be grouped into seven allelic classes based on the tota l number of repeats. No variation was observed in the alleles 17, 18 and 19 , which showed consensus sequence structures and in the allele 14, which sh owed a different structure. New variation was found in alleles 15, 16, and 20, which had differences occurred in a basic (TCTA)(TCTG)(n) repeat in the 5' side. The counterpart fragments were successfully amplified in three sp ecies (chimpanzees, gorilla, and orangutan) out of four kinds of anthropoid s, three species (rhesus macaques, Japanese macaques, and green monkey) out of four kinds of old world monkeys, but not in one species of either new w orld monkey or prosimian. The sizes of the fragments distributed from 92 to 180 bp in non-human primates and showed allelic size differences in four s pecies. The sequence of the 5' flanking region followed by primer sequences in humans and anthropoids, which consisted of 19 bp, was identical in all, but differed from that in old world monkeys. The basic repeat motifs of hu mans and anthropoids consisted of TCTA, TCTG, and TCCA but that of old worl d monkeys consisted of TCTG, TCCG and TCCA The structures of humans and ant hropoids were essentially similar, but with characteristic difference in ea ch species. Differences in the allelic structures of old world monkeys were complex. Seven different alleles were observed in two rhesus and two Japan ese macaques and one type of allele was observed in two green monkeys, Dupl ication of more than two repeat units of 4 bp was found in an allele of an old world monkey. These data illuminate interesting features of mutational changes in STRs during the long generations and also some insight into evol utional aspects of primates, (C) 2000 Elsevier Science Ireland Ltd. All rig hts reserved.