We used DNA microarrays to profile gene expression patterns in the C. elega
ns germline and identified 1416 germline-enriched transcripts that define t
hree groups. The sperm-enriched group contains an unusually large number of
protein kinases and phosphatases. The oocyte-enriched group includes poten
tially new components of embryonic signaling pathways. The germline-intrins
ic group, defined as genes expressed similarly in germlines making only spe
rm or only oocytes, contains a family of piwi-related genes that may be imp
ortant for stem cell proliferation. Finally, examination of the chromosomal
location of germline transcripts revealed that sperm-enriched and germline
-intrinsic genes are nearly absent from the X chromosome, but oocyte-enrich
ed genes are not.