Accurate and automated methods for measuring the thickness of human cerebra
l cortex could provide powerful tools for diagnosing and studying a variety
of neurodegenerative and psychiatric disorders. Manual methods for estimat
ing cortical thickness from neuroimaging data are labor intensive, requirin
g several days of effort by a trained anatomist. Furthermore, the highly fo
lded nature of the cortex is problematic for manual techniques, frequently
resulting in measurement errors in regions in which the cortical surface is
not perpendicular to any of the cardinal axes. As a consequence, it has be
en impractical to obtain accurate thickness estimates for the entire cortex
in individual subjects, or group statistics for patient or control populat
ions. Here. we present an automated method for accurately measuring the thi
ckness of the cerebral cortex across the entire brain and for generating cr
oss-subject statistics in a coordinate system based on cortical anatomy. Th
e intersubject standard deviation of the thickness measures is shown to be
less than 0.5 mm, implying the ability to detect focal atrophy in small pop
ulations or even individual subjects. The reliability and accuracy of this
new method are assessed by within-subject test-retest studies, as well as b
y comparison of cross-subject regional thickness measures with published va
lues.