We describe a broad class of family-based association tests that are adjust
ed for admixture; use either dichotomous or measured phenotypes; accommodat
e phenotype-unknown subjects; use nuclear families, sibships or a combinati
on of the two, permit multiple nuclear families from a single pedigree; inc
orporate di- or multi-allelic marker data; allow additive, dominant or rece
ssive models; and permit adjustment for covariates and gene-by-environment
interactions. The test statistic is basically the covariance between a user
-specified function of the genotype and a user-specified function of the tr
ait. The distribution of the statistic is computed using the appropriate co
nditional distribution of offspring genotypes that adjusts for admixture. G
enet. Epidemiol. 19(Suppl 1):S36-S42, 2000. (C) 2000 Wiley-Liss, Inc.