Dendritic spines are small protrusions on the surface of dendrites that rec
eive the vast majority of excitatory synapses. We previously showed that th
e cell-surface heparan sulfate proteoglycan syndecan-2 induces spine format
ion upon transfection into hippocampal neurons. This effect requires the CO
OH-terminal EFYA sequence of syndecan-2, suggesting that cytoplasmic molecu
les interacting with this sequence play a critical role in spine morphogene
sis, Here, we report a novel protein that binds to the EFYA motif of syndec
an-2. This protein, named synbindin, is expressed by neurons in a pattern s
imilar to that of syndecan-2, and colocalizes with syndecan-2 in the spines
of cultured hippocampal neurons. In transfected hippocampal neurons, synbi
ndin undergoes syndecan-2-dependent clustering. Synbindin is structurally r
elated to yeast proteins known to be involved in vesicle transport. Immunoe
lectron microscopy localized synbindin on postsynaptic membranes and intrac
ellular vesicles within dendrites, suggesting a role in postsynaptic membra
ne trafficking. Synbindin coimmunoprecipitates with syndecan-2 from synapti
c membrane fractions. Our results show that synbindin is a physiological sy
ndecan-2 ligand on dendritic spines. We suggest that syndecan-2 induces spi
ne formation by recruiting intracellular vesicles toward postsynaptic sites
through the interaction with synbindin.