Multidimensional replica-exchange method for free-energy calculations

We have developed a new simulation algorithm for free-energy calculations. The method is a multidimensional extension of the replica-exchange method. While pairs of replicas with different temperatures are exchanged during th e simulation in the original replica-exchange method, pairs of replicas wit h different temperatures and/or different parameters of the potential energ y are exchanged in the new algorithm. This greatly enhances the sampling of the conformational space and allows accurate calculations of free energy i n a wide temperature range from a single simulation run, using the weighted histogram analysis method. (C) 2000 American Institute of Physics. [S0021- 9606(00)50739-9].