The roles of selection and horizontal transfer in the evolution of the cano
nical subfamily of P elements were studied in the saltans and willistoni sp
ecies groups of the genus Drosophila (subgenus Sophophora). We estimate tha
t the common ancestor of the canonical P subfamily dates back 2-3 Myr at th
e most, despite the much older age (more than 40 Myr) of the P family as a
whole. The evolution of the canonical P subfamily is characterized by weak
selection at nonsynonymous sites. These sites have evolved at three quarter
s the rate of synonymous sites, in which no selective constraints were dete
cted. Their recent horizontal transfer best explains the high degree of sim
ilarity among canonical P elements from the saltans and willistoni species
groups. These results are consistent with a model of P-element evolution in
which selective constraints are imposed at the time of horizontal transfer
. Furthermore, it is estimated that the spread and diversification of the c
anonical subfamily involved a minimum of 11 horizontal transfer events amon
g the 18 species surveyed within the past 3 Myr. The presence of multiple P
subfamilies in the saltans and willistoni species groups is likely to be t
he result of multiple invasions that have previously swept through these ta
xa in a succession of horizontal transfer events. These results suggest tha
t horizontal transfer among eukaryotes might be more common than anticipate
d.