In order to estimate the rate and seasonal variation of Enterocytozoon bien
eusi contamination of surface water, sequential samples of water from the R
iver Seine in France were collected during a 1-year period. Each sample (30
0-600 l) was submitted to sequential filtrations, and the filters were then
examined for microsporidia using light microscopy and nested polymerase ch
ain reaction (PCR) for E. bieneusi. Amplified products were hybridized with
a E. bieneusi-specific probe. Twenty-five samples of water were analyzed d
uring 1 year. Microscopic examination of stained filters proved unreliable
for the identification of spores. Using nested PCR, 16 of 25 specimens were
positive (64%), Unexpectedly, E. bieneusi was identified in only one sampl
e by specific hybridization underlining the lack of specificity of ours pri
mers. Nevertheless, using DNA sequence analysis, unknown microsporidia spec
ies were identified in eight cases, which had highest scores of homology wi
th Vittaforma corneae or Pleistophora. This study shows a low rate of water
contamination by E. bieneusi suggesting that the risk of waterborne transm
ission to humans is limited. (C) 2000 Federation of European Microbiologica
l Societies. Published by Elsevier Science B.V. All rights reserved.