Somatically acquired genetic alterations play an important role in the path
ogenesis of acute lymphoblastic leukemia. The molecular analysis of these a
lterations has increased our understanding of the mechanisms of leukemogene
sis. In addition, this information has led to improvements in our abilities
to predict treatment response and to deliver the optimal intensity of trea
tment to individual patients. For example, the prognosis for patients with
acute lymphoblastic leukemia whose leukemic cells express the TEL-AML1 fusi
on is favorable when they are treated on modem chemotherapy protocols, wher
eas patients whose leukemic lymphoblasts contain the MLL-AF4 or the BCR-ABL
fusion sometimes require allogeneic hematopoietic stem cell transplantatio
n for cure. Molecular techniques are also used to detect minimal residual d
isease and genetic polymorphisms that are important in optimizing drug ther
apy.