With the use of a newly developed Imaging Cryomicrotome to determine the sp
atial location of fluorescent microspheres in organs, we validate and repor
t our processing algorithms for measuring regional blood flow in small labo
ratory animals. Microspheres (15-mum diameter) of four different fluorescen
t colors and one radioactive label were simultaneously injected into the le
ft ventricle of a pig. The heart and kidneys were dissected, and the number
s of fluorescent and radioactive microspheres were determined in 10 randoml
y selected pieces. All microsphere counts fell well within the 95% expected
confidence limits as determined from the radioactive counts. Fluorescent m
icrospheres (15-mum diameter) of four different colors were also injected i
nto the tail vein of a rat and the left ventricle of a rabbit. After correc
tion for Poisson noise, correlation coefficients between the colors were 0.
99 +/- 0.02 (means +/- SD) for the rabbit heart and 0.99 +/- 0.02 for the r
at lung. Mathematical dissection algorithms, statistics to analyze the spat
ial data, and methods to visualize blood flow distributions in small animal
organs are presented.