Photosystem II is a multisubunit pigment-protein complex embedded in the th
ylakoid membranes of chloroplasts, It consists of a large number of intrins
ic membrane proteins involved in light-harvesting and electron-transfer pro
cesses and of a number of extrinsic proteins required to stabilize photosyn
thetic oxygen evolution. We studied the structure of dimeric supercomplexes
of photosystem LI and its associated light-harvesting antenna by electron
microscopy and single-particle image analysis. Comparison of averaged proje
ctions from native complexes and complexes without extrinsic polypeptides i
ndicates that the removal of 17 and 23 kDa extrinsic subunits induces a shi
ft of about 1.2 nm in the position of the monomeric peripheral antenna prot
ein CP29 toward the central part of the supercomplex. Removal of the 33 kDa
extrinsic protein induces an inward shift of the strongly bound trimeric l
ight-harvesting complex II (S-LHCII) of about 0.9 nm, and in addition desta
bilizes the monomer-monomer interactions in the central core dimer, leading
to structural rearrangements of the core monomers. It is concluded that th
e extrinsic subunits keep the S-LHCII and CP29 subunits in proper positions
at some distance from the central part of the photosystem II core dimer to
ensure a directed transfer of excitation energy through the monomeric peri
pheral antenna proteins CP26 and CP29 and/or to maintain sequestered domain
s of inorganic cofactors required for oxygen evolution.