This paper concerns the impact of baseline drift and noise on some methods
for rate constant estimation from spectroscopic reaction monitoring data, a
nd means to assess the uncertainty in the estimates. The methods studied ar
e a target testing procedure and non-linear least squares fitting. Both sim
ulated and experimental data are used. The experimental data are from in si
tu UV/VIS and in situ ATR mid-IR monitoring of eater hydrolysis reactions.
For non-linear least squares fitting, biased estimates are obtained when ba
seline drift is present, since the drift violates the model assumptions. Th
e target testing procedure, on the other hand, can be used to reliably dete
rmine rate constants from spectroscopic data with baseline drift. Owing to
the use of a projection onto a stochastic subspace, bias can occur in the e
stimated rate constants also for this method. However, the results indicate
that in most cases this bias is not significant in practice. Bias and prec
ision in the estimated rate constants are dependent on noise level and over
lap in the spectral and time domains of the data. Bootstrapping can be used
to calculate confidence intervals that have good coverage properties in mo
st cases. Copyright (C) 2000 John Wiley & Sons, Ltd.