Reduced susceptibility of human immunodeficiency virus type 1 (HIV-1) frompatients with primary HIV infection to nonnucleoside reverse transcriptaseinhibitors is associated with variation at novel amino acid sites
Ajl. Brown et al., Reduced susceptibility of human immunodeficiency virus type 1 (HIV-1) frompatients with primary HIV infection to nonnucleoside reverse transcriptaseinhibitors is associated with variation at novel amino acid sites, J VIROLOGY, 74(22), 2000, pp. 10269-10273
Recently, significant numbers of individuals with primary human immunodefic
iency virus (HN) infection have been found to harbor viral strains with red
uced susceptibility to antiretroviral drugs. In one study, HN from 16% of s
uch antiretroviral-naive individuals was shown to have a susceptibility to
nonnucleoside reverse transcriptase (RT) inhibitors (NNRTIs) between 2.5- a
nd 10-fold lower than that of a wild-type control. Mutations in the RT doma
in that had previously been associated with antiretroviral resistance were
not shared by these strains. We have analyzed by logistic regression 46 var
iable amino acid sites in RT for their effect on susceptibility and have id
entified two novel sites influencing susceptibility to NNRTIs: amino acids
135 and 283 in RT. Eight different combinations of amino acids at these sit
es were observed among these patients. These combinations showed a 14-fold
range in mean susceptibility to both nevirapine and delavirdine. In vitro m
utagenesis of the control strain combined with a phenotypic assay confirmed
the significance of amino acid variation at these sites for susceptibility
to NNRTIs.