Regulatory loci, which may encode both trans acting proteins as well as cis
acting promoter regions, are crucial components of an organism's genetic a
rchitecture. Although evolution of these regulatory loci is believed to und
erlie the evolution of numerous adaptive traits, there is little informatio
n on natural variation of these genes. Recent molecular population genetic
studies, however, have provided insights into the extent of natural variati
on at regulatory genes, the evolutionary forces that shape them and the phe
notypic effects of molecular regulatory variants. These recent analyses sug
gest that it may be possible to study the molecular evolutionary ecology of
regulatory diversification by examining both the extent and patterning of
regulatory gene diversity, the phenotypic effects of molecular variation at
these loci and their ecological consequences.