Butternut (Juglans cinerea L.) is a minor component of the temperate decidu
ous forest region of northeastern North America, but it is severely affecte
d by the butternut canker (Sirococcus clavigignenti-juglandacearum Nair, Ko
stichka, and Kuntz) in the southern part of its natural range. Genetic dive
rsity and population structure in as-yet unaffected or only slightly affect
ed natural populations were evaluated at 12 isozyme loci. The genetic diver
sity estimates were low with values much below those estimated in other spe
cies of the same genus or in boreal tree species, with 25 and 13.9% polymor
phic loci at the species and population levels, respectively; 1.3 and 2.3 a
lleles per locus and per polymorphic locus, respectively, at the species le
vel; and an average observed heterozygosity of 0.028. Population differenti
ation was low, with the exception of one unique population. The implication
s for advanced conservation are discussed.