Non-photochemical quenching of chlorophyll fluorescence (NPQ) is symptomati
c of the regulation of energy dissipation by the light-harvesting antenna o
f photosystem II (PS II). The kinetics of NPQ in both leaves and isolated c
hloroplasts are determined by the transthylakoid Delta pH and the de-epoxid
ation state of the xanthophyll cycle. In order to understand the mechanism
and regulation of NPQ we have adopted the approaches commonly used in the s
tudy of enzyme-catalysed reactions. Steady-state measurements suggest allos
teric regulation of NPQ, involving control by the xanthophyll cycle caroten
oids of a protonation-dependent conformational change that transforms the P
S II antenna from an unquenched to a quenched state. The features of this m
odel were confirmed using isolated light-harvesting proteins. Analysis of t
he rate of induction of quenching both in vitro and in vivo indicated a bim
olecular second-order reaction; it is suggested that quenching arises from
the reaction between two fluorescent domains, possibly within a single prot
ein subunit. A universal model for this transition is presented based on si
mple thermodynamic principles governing reaction kinetics.