Coevolution between bacteria and their plant or animal hosts determines cha
racteristics of the interaction, the bacterial virulence genes involved, an
d the regulatory systems controlling expression of virulence genes. The lon
g-standing association between Salmonellae and their animal hosts has resul
ted in the acquisition by Salmonella subspecies of a variety of virulence g
enes and the evolution of complex regulatory networks. The particular reper
toire of virulence genes acquired by different Salmonella enterica subspeci
es and the regulatory systems that control them dictate subspecies-specific
infection characteristics. Although the association between Vibrio cholera
e and humans appears to be more recent, to reflect a simpler pathogenic str
ategy, and to involve fewer virulence genes than that of Salmonellae, compl
ex virulence-regulatory networks have nonetheless evolved. In contrast, the
re is no evidence for acquisition of virulence genes by horizontal gene tra
nsfer in bordetellae, and their virulence regulon is less complex in overal
l structure than those of salmonellae and Vibrio cholerae. In Bordetellae,
subspecies-specific differences in pathogenic strategy appear to result fro
m differential gene expression within and across Bordetella subspecies.