Basin-scale internal waves provide the driving forces for vertical and hori
zontal fluxes in a stratified lake below the wind-mixed layer. Thus, correc
t modeling of lake mixing and transport requires accurate modeling of basin
-scale internal waves: examining this capability with a hydrostatic, z-coor
dinate three-dimensional (3D) numerical model at coarse grid resolutions is
the focus of this paper. It is demonstrated that capturing the correct the
rmocline forcing with a 3D mixed-layer model for surface dynamics results i
n a good representation of low-frequency internal wave dynamics. The 3D est
uary and lake computer model ELCOM is applied to modeling Lake Kinneret, Is
rael, and is compared with field data under summer stratification condition
s to identify and illustrate the spatial structure of the lowest-mode basin
-scale Kelvin and Poincare waves that provide the largest two peaks in the
internal wave energy spectra. The model solves the unsteady Reynolds-averag
ed Navier-Stokes equations using a semi-implicit method similar to the mome
ntum solution in the TRIM code with the addition of quadratic Euler-Lagrang
e discretization, scalar (e.g., temperature) transport using a conservative
flux-limited approach, and elimination of vertical diffusion terms in the
governing equations. A detailed description is provided of turbulence closu
re for the vertical Reynolds stress terms and vertical turbulent transport
using a 3D mixed-layer model parameterized on wind and shear energy fluxes
instead of the convential eddy viscosity/diffusivity assumption. This appro
ach gives a good representation of the depth of the mixed-layer at coarse v
ertical grid resolutions that allows the internal waves to be energized cor
rectly at the basin scale.