Halogenated fatty acids are the major contributors to organohalogen co
mpounds in lipids of marine mammals, fish, and bivalves. For the initi
al characterization of these recently noticed compounds, a determinati
on of the halogen concentration has usually been combined with some li
pid isolation and separation method. This review covers separation by
solid phase chromatography, gel permeation chromatography, and liquid-
liquid extraction, followed by halogen determination. All studies perf
ormed according to this outline have indicated that the major organoha
logen compounds are chlorinated fatty acids bound in different lipids.
For the detection and identification of individual, halogenated fatty
acid methyl esters (FAMEs) liberated from the lipids, gas chromatogra
phy (GC) has been employed together with detection methods such as ele
ctron capture detection, electrolytic conductivity detection (ELCD), a
tomic emission spectrometry, and mass spectrometry. For most environme
ntal samples, chlorinated FAMEs must be enriched prior to GC. ELCD is
a useful detection method for indicating halogenated FAMEs in the chro
matograms, and tentative identification of the halogenated species can
be obtained by calculation of retention indices. For closer identific
ation of halogenated FAMEs, mass spectrometry (MS) is very useful, in
particular when employing the chemical ionisation mode. MS identificat
ion, however, is highly facilitated if halogenated species are first i
ndicated by element-selective methods.