Dn. Chakravarti et al., Application of genomics and proteomics for identification of bacterial gene products as potential vaccine candidates, VACCINE, 19(6), 2000, pp. 601-612
The ability of bioinformatics to characterize genomic sequences from pathog
enic bacteria for prediction of genes that may encode vaccine candidates, e
.g. surface localized proteins, has been evaluated. By applying appropriate
tools for genomic mining to the published sequence of Haemophilus influenz
ae Rd genome, it was possible to identify a putative vaccine candidate, the
outer membrane lipoprotein, P6. Proteomics complements genomics by offerin
g abilities to rapidly identify the products of predicted genes, e.g. prote
ins in outer membrane preparations. The ability to identify the P6 protein
uniquely from entries in a sequence database from the expected peptide-mass
fingerprint of P6 demonstrates the power of proteomics. The application of
proteomics for identification of vaccine candidates for another pathogenic
bacterium, Helicobacter pylori using two different approaches is described
. The first involves rapid identification of a series of monoclonal antibod
y reactive proteins from N-terminal sequence tags. The other approach invol
ves identification of proteins in outer membrane preparations by 2-D electr
ophoresis followed by trypsin digestion and peptide mass map analysis. Our
combined studies demonstrate that utilization of genome sequences by applic
ation of bioinformatics through genomics and proteomics can expedite the va
ccine discovery process by rapidly providing a set of potential candidates
for further testing. (C) 2000 Elsevier Science Ltd. All rights reserved.