The minimal time between successive initiations on the same origin (the ecl
ipse) in Escherichia coli was determined to be similar to 25-30 min. An inv
erse relationship was found between the length of the eclipse and the amoun
t of Dam methyltransferase in the cell, indicating that the eclipse corresp
onds to the period of origin hemimethylation. The SeqA protein was absolute
ly required for the eclipse, and DnaA titration studies suggested that the
SeqA protein prevented the binding of multiple DnaA molecules on oriC (init
ial complex formation). No correlation between the amount of SeqA and eclip
se length was revealed, but increased SeqA levels affected chromosome parti
tioning and/or cell division. This was corroborated further by an aberrant
nucleoid distribution in SeqA-deficient cells. We suggest that the SeqA pro
tein's role in maintaining the eclipse is tied to a function in chromosome
organization.