This study utilizes the GM/KM immunoglobulin allotype system to elucidate t
he phylogenetic relationships of sub-Saharan Africans. The importance of un
derstanding the relatedness of these peoples stems from the sub-Saharan reg
ion being the possible birthplace of humans. Haplotype distributions were d
etermined for 19 populations and compared using chi-square analysis. Publis
hed data of other sub-Saharan Africans and representative populations world
wide were also added for comparison. Genetic distances between populations
were calculated based on haplotype frequencies, and genetic relationships w
ere observed through principal components analysis. Data from the GM/KM sys
tem showed a genetic homogeneity of the Bantu populations, with some except
ions, supporting the possibility of a common origin of these peoples. The M
alagasy appeared as a divergent population, most likely due to Southeast As
ian/Austronesian admixture, as indicated by the presence of the GM*AF B hap
lotype. The Cape Coloured also showed a divergence, with their genetic stru
ctures containing Caucasoid and Khoisan contributions. Finally, the Mbuti P
ygmies appeared genetically isolated and had the highest frequency of the G
M*A B haplotype out of all studied populations.