Thermodynamic interpretation of NMR relaxation parameters in proteins in the presence of motional correlations

Citation
Jj. Prompers et R. Bruschweiler, Thermodynamic interpretation of NMR relaxation parameters in proteins in the presence of motional correlations, J PHYS CH B, 104(47), 2000, pp. 11416-11424
Citations number
48
Categorie Soggetti
Physical Chemistry/Chemical Physics
Journal title
JOURNAL OF PHYSICAL CHEMISTRY B
ISSN journal
15206106 → ACNP
Volume
104
Issue
47
Year of publication
2000
Pages
11416 - 11424
Database
ISI
SICI code
1520-6106(20001130)104:47<11416:TIONRP>2.0.ZU;2-J
Abstract
It is shown by quasiharmonic analysis that the conformational partition fun ction of a globular protein sampled on the ns time scale can be factorized in good approximation into a purely reorientational part, which determines heteronuclear NMR spin relaxation, and a remaining part that includes other types of intramolecular motions. This factorization provides a statistical mechanical basis for the thermodynamic interpretation of NMR relaxation pa rameters of proteins where atomic motions can be significantly correlated. Reorientational entropy differences between different backbone parts of the globular protein ubiquitin are found to be remarkably insensitive to motio nal correlation effects, which in some cases may significantly facilitate t he entropic interpretation of changes of NMR order parameters.