A mitochondrial complex comprising the voltage-dependent anion channel (out
er membrane), the adenine nucleotide translocase (inner membrane) and cyclo
philin-D (matrix) assembles at contact sites between the inner and outer me
mbranes. Under pathological conditions associated with ischaemia and reperf
usion the junctional complex 'deforms' into the permeability transition (PT
) pore, which can open transiently, allowing free permeation of low M-r sol
utes across the inner membrane. This may be a critical step in the pathogen
esis of lethal cell injury in ischaemia and reperfusion. Moreover, it is ar
gued, the degree of pore opening may be an important determinant of the rel
ative extent of apoptosis and necrosis under these conditions. In addition,
mitochondria are the major sites of action of Pax and other apoptotic regu
latory proteins of the Bcl-2 family. These proteins control a mitochondrial
amplificatory loop in the apoptotic signalling pathway in which cytochrome
c and other apoptogenic proteins of the mitochondrial intermembrane space
are released into the cytosol. There are indications that the junctional co
mplex, or components of it, may also mediate the action of Bax, but in a wa
y that does not involve PT pore formation.