Postsynaptic clustering of the glycine receptor requires the cytoplasmic pr
otein gephyrin, which interacts with the receptor beta subunit. Several var
iants of gephyrin are generated by alternative splicing and differ by the p
resence of short amino acid sequences (cassettes) in the N-terminal half of
the molecule. In this work, seven isoforms of gephyrin were cloned from ad
ult rat spinal cord, some of then containing new cassettes. The relationshi
ps between gephyrin structure and recognition of glycine receptor beta subu
nit were analyzed. This was carried out by GST-pull-down assays using the b
eta subunit cytoplasmic loop and cotransfection experiments of GFP-tagged g
ephyrins with an alpha1 subunit bearing the gephyrin-binding site of the be
ta subunit. Data demonstrated that not all gephyrin molecules can bind to t
he beta subunit. Identified cassettes modulate this interaction. It is thus
concluded that the function of gephyrin in synapse formation can rely on a
structure acquired through cassette combinations.