P. Webb et al., The nuclear receptor corepressor (N-CoR) contains three isoleucine motifs (I/LXXII) that serve as receptor interaction domains (IDs), MOL ENDOCR, 14(12), 2000, pp. 1976-1985
Unliganded thyroid hormone receptors (TRs) repress transcription through re
cruitment of corepressors, including nuclear receptor corepressor (N-CoR).
We find that N-CoR contains three interaction domains (IDs) that bind to TR
, rather than the previously reported two. The hitherto unrecognized ID (ID
3) serves as a fully functional TR binding site, both in vivo and in vitro,
and may be the most important for TR binding. Each ID motif contains a con
served hydrophobic core (I/LXXII) that resembles the hydrophobic core of nu
clear receptor boxes (LXXLL), which mediates p160 coactivator binding to li
ganded nuclear receptors. Although the integrity of the I/LXXII motif is re
quired for ID function, substitution of ID isoleucines with leucines did no
t allow ID peptides to bind to liganded TR, and substitution of NR box leuc
ines with isoleucines did not allow NR box peptides to bind unliganded TR.
This indicates that the binding preferences of N-CoR for unliganded TR and
p160s for liganded TR are not dictated solely by the identity of conserved
hydrophobic residues within their TR binding motifs. Examination of sequenc
e conservation between IDs, and mutational analysis of individual IDs, sugg
ests that they are comprised of the central hydrophobic core and distinct a
djacent sequences that may make unique contacts with the TR surface. Accord
ingly, a hybrid peptide that contains distinct adjacent sequences from ID3
and ID1 shows enhanced binding to TR.