In the presence of CP violation, the effective Hamiltonian matrix describin
g a neutral meson-antimeson system does not commute with its Hermitian conj
ugate. As a result, this matrix cannot be diagonalized by a unitary transfo
rmation and one needs to introduce a reciprocal basis. Although known, this
fact is seldom discussed and almost never used. Hen, we use this concept t
o highlight a parametrization of the Hamiltonian matrix in terms of physica
l observables, and we show that using it reduces a number of long and tedio
us derivations into simple matrix multiplications. These results have a str
aightforward application for propagation in matter. We also comment on the
(mathematical) relation with neutrino oscillations.