Ra. Monde et al., The sequence and secondary structure of the 3 '-UTR affect 3 '-end maturation, RNA accumulation, and translation in tobacco chloroplasts, PLANT MOL B, 44(4), 2000, pp. 529-542
RNA maturation and modulation of RNA stability play important roles in chlo
roplast gene expression. In vitro and in vivo studies have shown that both
the 5'- and 3'-untranslated regions (UTRs) contain sequence and structural
elements that guide these processes, and interact with specific proteins. W
e have previously characterized the spinach chloroplast petD 3'-UTR in deta
il by in vitro approaches. This stem-loop forming sequence is a weak termin
ator but is required for RNA maturation and also exhibits sequence-specific
protein binding. To test petD 3'-UTR function in vivo, tobacco chloroplast
transformants were generated containing uidA reporter genes flanked by var
iants of the petD 3'-UTR, including one which does not form an RNA-protein
complex in vitro, and one which lacks a stem-loop structure. Analysis of ui
dA mRNA indicated that a stable secondary structure is required to accumula
te a discrete mRNA, and that changes in the 3'-UTR sequence which affect pr
otein binding in vitro can also affect RNA metabolism in vivo. The 3'-UTR a
lso influenced beta -glucuronidase protein accumulation, but not in proport
ion to RNA levels. These results raise the possibility that in tobacco chlo
roplasts, the 3'-UTR may influence translational yield.