An incoherent scatter experiment using alternating coded pulses has been im
plemented at Jicamarca. The experiment is intended to facilitate aeronomy r
esearch in the topside and protonosphere. By virtue of utilizing the full d
uty cycle capabilities of the radar transmitter, the experiment has improve
d sensitivity over the conventional double pulse experiment and permits mul
tiple parameter estimation at protonospheric altitudes. Error analysis, inc
luding the estimation of the complete error covariance matrix for the alter
nating coded pulses, is discussed. Example density, temperature, and compos
ition data illustrate the capabilities of the new experiment.