Thrombophilia traditionally refers to rare inherited defects leading to enh
anced coagulation, especially of the venous system. In recent years, a broa
der search for genetic polymorphisms of prothrombotic genes has been carrie
d out to determine the relative impact on venous and arterial thrombosis. T
he bulk of evidence is drawn from numerous, often small, heterogeneous, cas
e control association studies, with a variety of end points (deep venous th
rombosis, myocardial infarction, or stroke). The data are often conflicting
and inconclusive with only factor V Leiden and prothrombin polymorphisms h
aving clear associations with venous thrombosis. Many of the polymorphisms
interact with established cardiovascular risk factors, in particular smokin
g, to increase greatly the risk of a thrombotic episode. Future studies wil
l need to consider the confounding factors of sample size, race, and clinic
al end points as well gene environment interactions.