Meiotic chromosome pairing of primary trisomics of rye was analysed by elec
tron microscopy in surface-spread prophase I nuclei and compared with light
-microscopic observations of metaphase I cells. Despite the large-sized chr
omosomes of rye, prophase I trivalent frequencies were close to the two thi
rds expected on a simple model with two terminal independent pairing initia
tion sites per trisome (set of three homologous chromosomes). Direct observ
ations mostly reveal one pairing partner switch (PPS) in prophase I trivale
nts, which confirms this supposition. There were no significant differences
between the number of trivalent and bivalent plus univalent configurations
observed at prophase and metaphase I; therefore, synapsed segments form ch
iasmata. In all of the trisomics, the three homologues showed variations no
t only in the number of telomeric C-bands but also in the amount of heteroc
hromatin of these bands, which allowed identification of chromosomes or chr
omosome arms associated in most metaphase I configurations. In trisomics fo
r chromosomes 2, 3 and 5, some metaphase I chromosome configuration frequen
cies did not fit those expected under the assumption of random chromosome a
ssociation among all partners, suggesting the existence of preferences for
pairing between two given chromosome arms of the trisome. No preferential a
ssociations either at metaphase I or pachytene were observed in the trisomi
cs for chromosome 6. The fit between theoretical pairing models and the exp
erimental data is also discussed.