It is commonly accepted that the DNA of Drosophila melanogaster does not co
ntain 5-methylcytosine, which is essential in the development of most eukar
yotes. We have developed a new, highly specific and sensitive assay to dete
ct the presence of 5-methylcytosine in genomic DNA. The DNA is degraded to
nucleosides, 5-methylcytosine purified by HPLC and, for detection by 1D- an
d 2D-TLC, radiolabeled using deoxynucleoside kinase and [gamma-P-32]ATP. Us
ing this assay, we show here that 5-methylcytosine occurs in the DNA of D.m
elanogaster at a level of similar to1 in 1000-2000 cytosine residues in adu
lt flies. DNA methylation is detectable in all stages of D.melanogaster dev
elopment.